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24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

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Presentation of expertise and results obtained by research teams working on the latest technologies available on GeT


Long reads : Dream or Reality
Presentation of expertise and results obtained by research teams working on the latest technologies available on GeT
  • 09h00 - 09h30 : Coffee
  • 09h30 - 09h45 : GeT Strategy, Denis Milan - Genome & Transciptime (GeT) core facility 
  • 09h45 - 10h15 : Implementation and Evaluation of Oxford Nanopore MinION and GridION sequencing, Catherine Zanchetta & Maxime Manno – GeT-PlaGe, INRA, Genotoul, US1426
  • 10h15 - 10h45 : Minion Sequencing Provides New Insight On The Evolutionary History Of Seabird Mitochondrial Genomes, Lucas Torres  - Littoral Environnement et Sociétés (LIENSs) UMR 7266 
  • 10h45 - 11h15 : Direct whole genome sequencing of avian poxvirus using Nanopore MinION, Guillaume Croville - Université de Toulouse, UMR 1225, INRA/ENVT
  • 11h15 - 11h45 : INVITED SPEAKER - De novo assembly of teleost fishes using PacBio sequencing data: What is gained?, Ole Kristian Tørresen -  Centre for Ecological and Evolutionary Synthesis, OSLO
  • 11h45 - 13h15 : Lunch
  • 13h15 - 13h45 : Implementation and Evaluation of Chromium technology, Olivier Bouchez & Claire Kuchly - GeT-PlaGe, INRA, Genotoul, US1426
  • 13h45 - 14h15 : Phasing Haplotypes in Rabbit using Long Reads Technology, Julie DEMARS - Génétique Physiologie et Systèmes d'Elevage (GenPhySE), INRA, UMR 1388
  • 14h15 - 14h45 : High-quality de novo genome assembly of the tomato genome using the latest longs reads sequencing and optical mapping technologies, Mohamed Zouine - Laboratoire Génomique et Biotechnologie du Fruit GBF, UMR990,  INRA/INP-ENSAT
  • 14h45 - 15h15 : Two examples of hard to assemble genomes, even with 3rd generation sequences, Christophe Klopp - Unité de Mathématiques et Informatique Appliquées de Toulouse (MIAT) INRA
  • 15h15 - 15h45 : Coffee
  • 15h45 - 16H15 : Not SMRT yet smart: 3D genomics with Hi-C sequencing, Sylvain Foissac , Génétique Physiologie et Systèmes d'Elevage (GenPhySE), INRA, UMR 1388
  • 16h15 - 16h45 : Comparison of methylome profiles between closely related clones of the bacterial plant pathogen Ralstonia solanacearum, Alice Guidot - Laboratoire des Interactions Plantes Micro-organismes (LIPM) UMR CNRS-INRA 2594/441
  • 16h45 - 17h15 : Diversity of HEV genotype 3 based on full-length sequences, Florence Nicot - Pôle Biologie IFB Hôpital Purpan